Irwin Allen's Voyage to the Bottom of the Sea S01E06 - The Sky is Falling

An alien spaceship lands in the ocean, and Seaview is sent to investigate. Although Seaview is powerless in the vicinity of their ship, the aliens seem friendly, and Nelson manages to open negotiations. The military authorities, however, have other ideas, and Seaview may be in as much danger from human interference as from the aliens.